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Data examples

User Parameter

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Pattern Parameters

Sequence type : DNA   Proteins 
from  to  in nucleotides
from  to  in nucleotides
from  to  in nucleotides
from   to  in nucleotides

Target Sequence

genome user sequence
Organism

Citation

For publication of results, please cite:

Suffix-tree analyser (STAN): looking for nucleotidic and peptidic patterns in chromosomes
Jacques Nicolas , Patrick Durand , Grégory Ranchy , Sébastien Tempel and Anne-Sophie Valin
Bioinformatics 2005 21(24):4408-4410

View the abstract





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Data examples

Nucleic data

  • Sequence type: DNA
  • Pattern: CTAGATTTTAA:2-X:[7]-x(4)-~X:5-ACGATTT:1
  • Target Sequence: genome
  • Organism: Arabidopsis thaliana
  • Chromosome: chr1

Proteic data

  • Sequence type: Protein
  • Pattern: C-x(3)-[FYWLIV]-D-x(3,4)-C-[FW]-x(2)-[STAGV]-x(8,9)-C-[PF]
  • Target Sequence: genome
  • Organism: Anopheles gambiae
  • Chromosome: chr2R

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Last modified: Thu Oct 19 10:59:01 CET 2006